Fig. 2

De novo analysis provided by MSCsDB. Users can submit their scRNA-seq data and run analyses for (A) MSC clustering and annotation using Scanpy package, (B) pathway enrichment using clusterprofiler package, (C) copy number variation and aneuploid prediction using CopyKAT and InferCNVpy packages, (D) Transcription factor network analysis using pyscenic package and (E) pseudotime trajectory inference using PAGA method. Users need to input data in a specified format, select appropriate parameters, and provide an email address to receive the analysis results. The analysis results will be sent to the users via email and displayed on the web page